Issue 1028: Integrate AlphaPeptDeep prediction into Peptide Settings - Library

issues

Closed:

2026-01-06 13:22 by Brendan MacLean

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1029	Todo	Skyline	Integrate Carafe into Peptide Settings - Library - Build	Guest	2	closed	24.2

2024-07-09 10:32

Brendan MacLean

Title	»	Integrate AlphaPeptDeep prediction into Peptide Settings - Library - Build
Assigned To	»	xgwang
Notify	»	Nick Shulman
Type	»	Defect
Area	»	Skyline
Priority	»	3
Milestone	»	24.2

A member of the Mann lab approached me at ASMS to request this integration, and Mike MacCoss and Bill Noble have agreed that this is both desirable for Skyline users and a good first milestone towards integrating Bo Wen's Carafe tool.

Here is a spec that covers both:
https://docs.google.com/presentation/d/1M0_K3K8X9vNeRmOfqNtDWGxJH9b15CnshnE8OUFnTqo/edit?usp=sharing

PR 3033 implements the draft UI:
https://github.com/ProteoWizard/pwiz/pull/3033

2024-07-09 10:33

Brendan MacLean

Type	Defect	»	Todo
Priority	3	»	2

2024-07-09 10:35

Brendan MacLean

1029

2026-01-06 13:21

Brendan MacLean

resolve as GitHub Move

Status	open	»	resolved
Assigned To	xgwang	»	Brendan MacLean

Skyline issues have moved to GitHub Issues at https://github.com/ProteoWizard/pwiz/issues
Issues will be ported as necessary for active work.

2026-01-06 13:22

Brendan MacLean

close

Status	resolved	»	closed
Assigned To	Brendan MacLean	»	Guest